What’s new

Release history

Version 1.5.1.2 (8/22/25)

  • (docs) Sigh. While fixing deployment I broke the documentation. This should fix it.

Version 1.5.1.1 (8/22/25)

  • (deployment) Well, that didn’t work. Here’s another attempt to fix pypi deployment.

Version 1.5.1 (8/22/25)

  • (deployment) Attempt to fix pypi deployment.

  • (docs) A few tweaks to the sidebar.

Version 1.5.0 (8/22/25)

  • (package) Modernized packaging and installation to match rapidtide (moved pretty much everything to pyproject.toml).

  • (package) Fixed all the copyright notices.

  • (package) Added codespell.

  • (docs) Fixed readthedocs build (it’s been broken for quite some time).

  • (Docker) Turned on provenance and sbom in Docker builds.

  • (Docker) Rebuilt on the newest basecontainer with several security fixes.

  • Merged many, many dependabot PR’s

Version 1.4.0 (11/18/23)

  • (Docker) Made compatible with the new (small) basecontainer architecture.

Version 1.3.9 (4/25/23)

  • (package) Removed numba as a dependency.

  • (package) Made pyfftw an optional dependency (it’s no longer in basecontainer).

  • (package) Made some proactive fixes for numpy 2.0.0 compatibility.

  • (package) Accepted several dependabot PRs.

  • (package) General cleanup of automated workflows to match updates to rapidtide.

  • (Docker) Cleaned up and simplified Dockerfile.

  • (Docker) Updated to basecontainer:latest-release (0.3.5 atm).

Version 1.3.8 (12/11/23)

  • (Docker) Updated to basecontainer 0.3.0.

  • (Docker) Added caching to build.

Version 1.3.7 (9/13/23)

  • Mass merge of a bunch of dependabot PRs.

  • (Docker) Updated to basecontainer 0.2.3.

Version 1.3.6 (5/11/23)

  • (Docker) Updated to python 3.11 basecontainer.

  • (Docker) Fixed testdocker.sh.

  • (package) Modernized install procedure.

Version 1.3.5 (1/11/23)

  • (capfromtcs) Fixed summary statistics outputs.

Version 1.3.4 (1/10/23)

  • (capfromtcs) Revert change to max_iter when specifying initialcenters.

Version 1.3.3 (1/10/23)

  • (capfromtcs) Changed initialization of kmeans from initialcenters, save more intermediate results.

  • (utils.py) Factored out some transition array calculations.

Version 1.3.2 (11/15/22)

  • (capfromtcs) Fixed a typo in specifying the initial k-means++ method.

  • (io) Updated libraries to match some changes in rapidtide.

Version 1.3.1 (11/10/22)

  • (capfromtcs) Added new option “–initialcenters” to allow specification of k-means cluster centers. This lets you reuse the CAPS as previous runs, but gets around the difficulty of reading back old models run under a different version of python or scikit-learn.

Version 1.3.0 (11/10/22)

  • (package) Removed rapidtide as a dependency by copying over the necessary support routines.

  • (Docker) Updated basecontainer to latest, switched over to using pip rather than mamba for env.

  • (docs) Corrected a problem that was causing readthedocs build to fail.

Version 1.2.3 (8/31/22)

  • (capfromtcs, clustercomp) Used newer, non-deprecated method to access nifti files with nibabel.

  • (package) Added docker and singularity test scripts.

  • (package) Reformatted several files with black.

  • (package) Made many (unsuccessful) attempts to get the documentation to build.

Version 1.2.2.5 (8/30/22)

  • (package) Bump to trigger github deployment.

Version 1.2.2.4 (8/30/22)

  • (package) Convert README.md to README.rst

Version 1.2.2.3 (8/30/22)

  • (package) Fixed Development status in setup.py

Version 1.2.2.2 (8/30/22)

  • (package) Syncing with rapidtide to try to get pypi deployment to work

Version 1.2.2.1 (8/29/22)

  • (package) Fixed versioneer installation.

Version 1.2.2 (8/29/22)

  • (package) Updated pyproject.toml and versioneer to try to fix pypi deployment.

Version 1.2.1 (8/22/22)

  • (Docker) Fixed Dockerfile error.

  • (package) Updated pypi authentication information.

Version 1.2.0 (8/22/22)

  • (Docker) Added Docker compatibility.

  • (package) Updated to match the current version of rapidtide.

  • (package) Added “refresh” script to simplify updates.

  • (package) Formatting changes.

  • (capfromtcs) Fixed import of joblib, updated to new NonCausalFilter calling conventions.

  • (clusternifti) Major overhaul. Added normalization, PCA and ICA dimensionality reduction, switched to argparse, added repeats.

  • (clustersort) New program to harmonize multiple cluster solutions.

  • (clusternifti, clustersort, supercluster) Harmonized mask specification arguments and internal variable names.

Version 1.1.0 (8/20/21)

  • (package) Move to versioneer.

Version 1.0.0 (2/15/17)

  • First release