Capcalc

capcalc is a suite of python programs used to perform coactivation pattern analysis on time series data. It uses K-Means clustering to find a set of “activation states” that represent the covarying patterns in the data.

HTML documentation is here: http://capcalc.readthedocs.io/en/latest/

Citing capcalc

Frederick, B, capcalc [Computer Software] (2016-2022). Available from https://github.com/bbfrederick/capcalc. doi:10.5281/zenodo.7035806

Contents

• Introduction
• Capcalc
• NOTE
• Ok, I’m sold. What’s in here?
• Installation
  • Required dependencies
  • Installing from pypi
  • Installing with conda
  • Installing capcalc
  • Updating
• Docker installation
• Singularity installation
• Usage information
  • roidecompose
  • capfromtcs
  • maptoroi
  • roidecompose

History:

• What’s new
  • Release history

Indices and tables

• Index

• Search Page